Jaroenram, Wansadaj, et al. Journal of microbiological methods 156 (2019): 9-14.
Xylenol orange (XO), a low-cost pH-dependent dye that shifts from yellow (< pH 6.7) to violet, was combined with loop-mediated isothermal amplification (LAMP) for naked-eye detection of Escherichia coli.
Experimental Protocol: LAMP primers were designed against the E. coli yaiO gene, and 25 µL reactions containing 2 µM inner and loop primers, 0.2 µM outer primers, 1.4 mM dNTPs, 0.6 M betaine, 4 mM MgSO4 and 8 U Bst 2.0 DNA polymerase were run in a low-buffer solution (100 mM (NH4)2SO4, 500 mM KCl, 20 mM MgSO4, 1% Tween-20). Optimal conditions were 63 °C, initial pH 8.5 and 0.06 mM XO; DNA from E. coli ATCC 10536 was tested in spiked milk samples alongside AGE confirmation.
Performance Evaluation: Amplification dropped the pH from about 8.5 to 6.0-6.5, turning positive samples from purple to yellow/orange. The assay detected as little as 1 CFU/reaction after 120 min-100,000 times more sensitive than multiplex PCR (105 CFU/reaction)-with no cross-reaction against eight other foodborne pathogens. Across 83 milk samples (51 spiked, 32 non-adulterated), sensitivity, specificity and accuracy were all 100%.